PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG093700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 145aa    MW: 15269.2 Da    PI: 5.1629
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG093700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS123.23e-381144234374
                 GRAS 234 lsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319
                          ++P vv+++e+ea  +s+    ++ ++++ a++yysa+fd+lea++p+ s +r  vE+e+lg+ei  vva  +a    r + + +W  + 
  Pavir.1NG093700.1.p   1 MNPSVVTLAEREAGIGSNcpaeDLHRGVAAAMDYYSAVFDALEATAPPGSADRLAVEQEVLGQEIDAVVAPGHAG--RRARGFDSWATAA 88 
                          69**********77765545559***************************************************9..567799******* PP

                 GRAS 320 eeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          ++aG++p pls +a++qa+lllr ++ s+gy  ee +g+ +lgW++rpL+svS+W+
  Pavir.1NG093700.1.p  89 RAAGLSPRPLSAFAVSQARLLLRLHYpSEGYVAEEARGACFLGWQTRPLMSVSSWQ 144
                          *******************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.4991123IPR005202Transcription factor GRAS
PfamPF035141.0E-351144IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MNPSVVTLAE REAGIGSNCP AEDLHRGVAA AMDYYSAVFD ALEATAPPGS ADRLAVEQEV  60
LGQEIDAVVA PGHAGRRARG FDSWATAARA AGLSPRPLSA FAVSQARLLL RLHYPSEGYV  120
AEEARGACFL GWQTRPLMSV SSWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-141144232375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276926e-89KJ727692.1 Zea mays clone pUT5631 GRAS transcription factor (GRAS17) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645406.18e-72PREDICTED: protein MONOCULM 1-like
RefseqXP_008645407.18e-72PREDICTED: protein MONOCULM 1-like
SwissprotQ84MM97e-53MOC_ORYSJ; Protein MONOCULM 1
TrEMBLK3Z0751e-79K3Z075_SETIT; Uncharacterized protein
STRINGSi019936m4e-79(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.15e-39GRAS family protein